VMware NSX 4.2.1.0
VMware SDDC Manager
The cause of this issue is unknown.
If there are stale ESXi transport nodes remaining in the NSX Manager, that are listed as members of a Transport Zone in "Unknown" status, first it's important to validate that these ESXi hosts no longer exist in vCenter Server or SDDC Manager. Do not continue with this resolution if the hosts exist in either of the two products.
If those ESXi hosts do not exist in vCenter Server or in SDDC Manager then follow these steps:
1. Copy each of those ESXi host names listed in the Transport Zone into a notepad
2. For each of these ESXi hosts, copy the name and search in the NSX elastic search (search button at the top of the NSX UI)
3. From the search results identify the UUID for each of these ESXi TNs and paste them into the notepad next to the hostname
Once you have the UUID for each of those ESXi hosts, follow the steps in Option 3 under Resolution of this KB:
Installing or Upgrading NSX on an ESXi host fails reporting the node already exists
Once all the stale ESXi hosts are cleaned up, the Transport Zone containing them will automatically disappear from the NSX UI (but in some case you may need to wait a few minutes for this to happen).