This behaviour is seen in a scenario where the server VM still tracks a TCP session that the client is no longer aware of.
When the server receives a SYN using ports already in use, it replies with a Challenge ACK.
The DFW drops the Challenge ACK. The client is unaware and retransmits the SYN packets until timeout.
This issue was introduced on NSX-T Data Center 3.0.3 and 3.1.1 and does not affect earlier releases on either branch.
On fixed versions, the DFW sees the Challenge ACK and sends a RST back to the server to clear the TCP state on the server.