VMware engineering is aware of the issue and is working on a fix for a future release.
Workaround:
If the vSAN version is 7.0U3c or higher but below version 8.0 then follow
Manually Shut Down and Restart the vSAN Cluster after shutting down the vCenter HA nodes as per
Reboot All vCenter HA Nodes.
For vSAN clusters running version 8.0 or higher follow the below steps.
1. Power off the vCenter Passive node VM
2. Use the cluster shutdown wizard to shut down the cluster and allow the shutdown workflow to power off the vCenter Active Node and Witness node
To restart the cluster after shutting it down follow these steps:
1. Power on the hosts in the cluster
2. Wait for vCenter Server to restart
3. click "Restart cluster" in the vSphere Client
4. Power on the vCenter Passive node VM