This failure is not specifically related to applying PTF's with CSM. This is an SMP/E issue where the FMID LIST in the GLOBALZONE does not include the FMID's being updated by the PTF's. When the RECEIVE of a base install is done the FMID of the SYSMOD is added to the FMID list. It stays in the GLOBALZONE FMID list after it is applied and accepted.
Since the FMID's being updated are not in the FMID list of the GLOBALZONE but are in the target zone the CSI must have been modified with UCLIN to delete the FMIDs from the FMID list, or the target zone was reassigned to this GLOBALZONE by adding it to it's ZONEINDEX. In either case the FMID list can be updated to include the FMID's being updated using UCLIN.
Syntax to verify that the FMID's being updated by the PTF's are not in the FMIDLIST:
//SYSIN DD * SET BOUNDARY(GLOBAL). LIST GLOBALZONE. /*
Syntax to include FMID's in the FMID list:
//SMPCNTL DD * SET BDY(GLOBAL) . UCLIN . REP GLOBALZONE FMID ( xxxxxxx.....) ENDUCL. //*