On the agent machine where the job runs, go to the agent installation directory and open the agentparm.txt file. Make sure these parameters are set in there. If not, add them anywhere in the file and restart the agent...
filemon.firstscan.skip=true
oscomponent.cmdprefix.force=true
oscomponent.initialworkingdirectory=USER_CONT_NOT_AVAIL
oscomponent.noexitcode=256
oscomponent.noforceprofile=true
oscomponent.profiles.src.delay=true
oscomponent.profiles.src.order.global.first=true
oscomponent.profiles.src.verify=true
The specific parameter that allows the AUTORUN variable to be available is 'oscomponent.cmdprefix.force=true'. However, it is recommended that all of these parameters be set for optimal compatibility with WAAE.