"Your environment is now in mixed mode. It is recommended you update your linked vCenter Servers"/usr/lib/vmware-vmdir/bin/vdcrepadmin -f showpartners -h localhost -u administrator
vCenter 7.x, 8.x
The lack of a replication agreement between the nodes already in Linked mode, results in VMDIR being inconsistent. Without a replication agreement, the 'partner' node has no way of keeping track of any changes on the node that is supposed to be a partner.
Follow KB: Fixing VMDIR inconsistencies with SSO domain repoints to repoint the vCenters to a new SSO domain.
Note: FixPSC will not resolve the issue since there isn't a replication agreement between the nodes, despite the vCenters already being in ELM.