sudo root access and that same user being able to see the files when logged into the server manually. Why could this occur?
In linux, the user running the robot where logmon is installed or the specific user that is running logmon, to access a folder must have the Execute (x) permission on every single directory in the path leading to the target. If any of the folder don't have this permission, the target folder will show an empty folder view.
namei -m /full/path/to/target/folder