.vmdk, .vmx, and .log.VMware vCenter server
This behavior is by design. vCenter and the vSphere Datastore Browser are designed to manage the "virtual hardware" and container files of the VM, not the data residing inside the Guest Operating System's file system.
Isolation: For security reasons, the hypervisor (ESXi) maintains a strict boundary between the host storage and the guest's internal data.
Datastore vs. Guest OS: The Datastore Browser views the disk from the outside. It sees a single large virtual disk file (VMDK), but it cannot "reach inside" that disk to see individual folders or files while the VM is running.
To transfer files from a Guest OS to your local machine use standard protocols like SCP, SFTP etc.