SD-WAN Edge in 5.0.x release may not learn IPv6 routes from hub sites after rebooting.
VMware SD-WAN 5.0.0 and 5.0.1
This issue is caused by Issue #130674.
IPv6 remote routes exchange is skipped when the only physical interfaces configured with IPv6 are disconnected during boot up. Even after the edge is up and the interfaces are connected, the edge is still not able to learn the IPv6 routes. This may occur during boot-up sequences.
Upgrade the SD-WAN Edge to Release 5.0.2
The fix will also be available in 5.2.3 and 6.0.0, though the dates for when each of those releases will be available are still not available.