This article provides troubleshooting steps when LUNs are missing:
VMware Skyline Health Diagnostics for vSphere - FAQ
"Host Connectivity Degraded in ESXi" warning in vCenter Server
"An error occurred while consolidating disks" when deleting one or more snapshots or consolidate disks
Performing a rescan of the storage on an ESXi host
Interpreting SCSI sense codes in VMware ESXi