This issue occurs when the initialize-control cluster command is run on all NSX-T Controllers, each of the Controller becomes a 1-node cluster which can cause undefined datapath connectivity issues.
VMware recommends when creating a controller cluster, you should run the
initialize control-cluster command on only the first Controller, and then join the other Controllers to the cluster by running the
join control-cluster command on the first Controller. For more information, see the
NSX Controller Installation and Clustering section of the
NSX-T Installation Guide.