This can occur because of the combination of the Health Check protocol design and Route Based on IP hash of Load Balancing algorithm.
When Health Check starts, each host sends a broadcast frame to other hosts from their uplink and will receive a unicast frame from the other host if each frame can be reachable.
Health Check protocol determines the health status of VLAN and MTU if the uplink port which the broadcast frame was sent from can receive the unicast frame itself or not.
However, If Load balancing policy for the vDS switch port is configured as Route based on IP hash and EtherChannel is configured in the opposed physical switch, the physical switch may send the unicast frame to another uplink of host which the broadcast was not sent because of load balancing algorithm.
As a result, Health Check determines the uplink has some failure and VLAN and MTU are reported as Not Supported for the uplink.