NSX-T NestDB database and etc/group file corrupted due to out of memory issue

Products

• VMware NSX

Issue/Introduction

• You may notice that your NSX-T Edge Node cannot boot up and may enter emergency mode

• In the NSX-T UI you observe that the NSX-T Edge Node's configuration state is Failed and connectivity to the NSX-T Manager is down.

 

• If the NSX-T Edge Node was already booted successfully you may notice similar entries in the /var/log/syslog.log file.

20##-##-##T##:##:##.076Z NSX-edge01 NSX 2992 - [nsx@6876 comp="nsx-edge" subcomp="nsx-nestdb" tid="2992" level="ERROR" errorCode="NST0103"] leveldb::DB::Write() failed: Corruption: not an sstable (bad magic number)

20##-##-##T##:##:##.076Z NSX-edge01 NSX 3269 - [nsx@6876 comp="nsx-edge" subcomp="nsx-nestdb" tid="3269" level="INFO"] DbAccess error in NestDbServer::GetNextTxnId(): Corruption: not an sstable (bad magic number). txn_id_ not persisted to db.

• You may also notice that the NestDb service is unable to start,  leading to communication issue with NestDB.

Note: The preceding log excerpts are only examples. Date, time, and environmental variables may vary depending on your environment.

 

Environment

VMware NSX-T Data Center
VMware NSX-T Data Center 4.x
VMware NSX-T Data Center 3.x

Cause

The errors that come from NestDB are due to NestDB corruption.

Resolution

This issue is resolved in NSX-T version 4.1. Build numbers and versions of VMware NSX/NSX-T Data Center

Workaround:
There are two workarounds for this issue:

1. Replace NSX-T Edge Node

This can be done by Redeploy an NSX Edge VM Appliance and replacing the NSX-T Edge Node in the Edge cluster.

2. Remove the content of the DB directory and restart NestDB

service nsx-nestdb stop
/bin/rm -rf /config/vmware/nsx/nestdb/db/*
service nsx-nestdb start