The Rapid Config is designed to issue Local Approvals for files when the Agent sees them being written. Changes to the Rapid Config are not retroactive.
The existing files will need to either be retroactively issued Local Approvals or a temporary Execution Control (Allow) Rule will be needed.
Update the Windows App Store Rapid Config accordingly to include the new/adjusted paths for the desired software.
Examples: \windowsapps\*hpprintercontrol*\* \windowsapps\appup.intelgraphicsexperience*\*