Having configured SoD (Separation of Duties) in CA Identity Governance (IG) all seems ok and running a test from Identity Governance shows the results as expected, however when running a certification test from Identity Portal some false alerts are generated.
Release : 14.3 CP2
Component : IdentityMinder(Identity Manager)
Modifying the audit properties file <wildfly>\conf\audit\parameters\default-parameters.properties" and setting all properties that were true to false except "user.resource.connections.privileges.direct = true" resolves the issue.