MS16-100 Windows8.1-2012-R2-KB3172729-x64.msu is not being reported as Applicable for Windows Server 2012 R2 computers that were reported as applicable by Microsoft Baseline Security Analyzer when using patch management
STPatchAssessment.log contained the following information
2017-02-27T18:51:29.6003780Z 3094 V PatchTest.cpp:610 Testing 'MS16-100'.
2017-02-27T18:51:29.6003780Z 3094 V PatchTest.cpp:1113 Return[DOES NOT APPLY] Message[]
2017-02-27T18:51:29.6003780Z 3094 V PatchTest.cpp:653 NOT testing 'MS16-100' - patch script said it did not apply.
Windows Server 2012 R2
Referreing to the link listed below:
https://support.microsoft.com/en-us/help/3172729/ms16-100-description-of-the-security-update-for-secure-boot-august-9,-2016
Refer to the section Known issues in this security update
This update requires KB3173424 to be installed if running Windows 2012 R2
Install KB3173424. Then the applicability rule will show as being applicable.